Welcome to AtlasXBrowser’s Documentation!

AtlasXBrowser is a Graphical User Interface used to facilitate the processing of Spatial Omics images. Learn more about AtlasXomics.

AtlasXBrowser:

• Overview
• Installation
  • Methods of Installation
  • Running Executable
  • Running from Source
  • Managing Dependencies
  • Running AtlasXbrowser
• Loading Tissue images
  • Image Specifications and Fluorescent Staining
  • Image Folder Specifications
  • Loading Image and Entering Metadata
  • Barcode File Selection
• Image Configuration
  • Rotating the Image
  • Cropping the Image
• Thresholding
  • Tuning Parameters
  • Thresholding Examples
• Characterizing Region of Interest
  • Locating ROI
  • Overlaying Tixels
  • Activating Tixels
• Utilizing Spatial Folder
  • Examining Spatial Folder
  • Loading Spatial Folder
• Guided Example
• Running on Latch
  • Opening App