.. AtlasXBrowser Documentation documentation master file, created by
   sphinx-quickstart on Tue Apr 12 16:15:55 2022.
   You can adapt this file completely to your liking, but it should at least
   contain the root `toctree` directive.

Welcome to AtlasXBrowser's Documentation!
======================================================
AtlasXBrowser is a Graphical User Interface used to facilitate the processing of Spatial Omics
images.
Learn more about `AtlasXomics`_.

.. _AtlasXomics: https://www.atlasxomics.com

.. toctree::
   :caption: AtlasXBrowser:

   Overview
   Installation
   OpeningFolder
   ImageConfiguration
   Thresholding
   ROICharacterization
   SpatialFolder
   ExampleWalkthrough
   UsingLatch

.. image:: ./images/atlasbg.png

..
   Spatial Transcriptome<https://docs.atlasxomics.com/projects/AtlasXpipeline/en/latest/SpatialTranscriptome.html>
   Glossary <https://docs.atlasxomics.com/projects/AtlasXpipeline/en/latest/Glossary.html>
   FAQ Spatial Epigenome <https://docs.atlasxomics.com/projects/AtlasXpipeline/en/latest/FAQ_Spatial_Epigenome.html>